PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001914m
Common NameCICLE_v10001914mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family DBB
Protein Properties Length: 312aa    MW: 33698.6 Da    PI: 6.6803
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001914mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.81.9e-07445539
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                      C+ +++ e++ fC+ ++  lC++C    H+        H++
  Ciclev10001914m  4 QCDVCNKSEASVFCTADEAALCDTCDHRVHHAnklaskhHRF 45
                     7******99********************6445888886666 PP

2zf-B_box23.21.4e-075692438
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                     ++C+ ++e ++ lfC++++  lC+dC   +H    Ht
  Ciclev10001914m 56 PICDVCQERRAFLFCQQDRAILCRDCDIPIHTAneHT 92
                     68****************************9546665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.836147IPR000315B-box-type zinc finger
CDDcd000214.81E-6347No hitNo description
PfamPF006432.5E-5444IPR000315B-box-type zinc finger
SMARTSM003362.2E-6447IPR000315B-box-type zinc finger
PROSITE profilePS501199.86953100IPR000315B-box-type zinc finger
SMARTSM003361.1E-1353100IPR000315B-box-type zinc finger
CDDcd000215.48E-1056100No hitNo description
PfamPF006431.5E-55692IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MKIQCDVCNK SEASVFCTAD EAALCDTCDH RVHHANKLAS KHHRFSLLHP SSKHFPICDV  60
CQERRAFLFC QQDRAILCRD CDIPIHTANE HTQKHNRFLL TGVKLSATST LYTSSVSKSN  120
PNGCDSSVPV PDANKSIKKT VVSVAPVNSN PPSNSEISTS SAVTNSNGGN SVIAANECGT  180
VSASSISEYL EMLPGWHVED LLDSSSDPLG FCKGNDGTLP FLDADLDCNL SSFSSERVGI  240
WVPQAASPVQ TCLYSSQSQT AGHISFKDAK EVTGVKAVSS NRRHTEDVFT VPQISPQLAG  300
FKRSRPNIWE D*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435097.10.0hypothetical protein CICLE_v10001914mg
SwissprotQ9LQZ76e-83BBX21_ARATH; B-box zinc finger protein 21
TrEMBLV4T5700.0V4T570_9R
STRINGPOPTR_0002s02970.11e-125(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54002748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.13e-80salt tolerance homolog2